Tag: strace

2008-06-11 00:09 UTC 5 simple ways to troubleshoot using Strace

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I keep being surprised how few people are aware of all the things they can use strace for. It's always one of the first debug tools I pull out, because it's usually available on the Linux systems I run, and it can be used to troubleshoot such a wide variety of problems.

What is strace?

Strace is quite simply a tool that traces the execution of system calls. In its simplest form it can trace the execution of a binary from start to end, and output a line of text with the name of the system call, the arguments and the return value for every system call over the lifetime of the process.

But it can do a lot more:

  • It can filter based on the specific system call or groups of system calls
  • It can profile the use of system calls by tallying up the number of times a specific system call is used, and the time taken, and the number of successes and errors.
  • It traces signals sent to the process.
  • It can attach to any running process by pid.

If you've used other Unix systems, this is similar to "truss". Another (much more comprehensive) is Sun's Dtrace.

How to use it

This is just scratching the surface, and in no particular order of importance:

1) Find out which config files a program reads on startup

Ever tried figuring out why some program doesn't read the config file you thought it should? Had to wrestle with custom compiled or distro-specific binaries that read their config from what you consider the "wrong" location?

The naive approach:

$ strace php 2>&1 | grep php.ini
open("/usr/local/bin/php.ini", O_RDONLY) = -1 ENOENT (No such file or directory)
open("/usr/local/lib/php.ini", O_RDONLY) = 4
lstat64("/usr/local/lib/php.ini", {st_mode=S_IFLNK|0777, st_size=27, ...}) = 0
readlink("/usr/local/lib/php.ini", "/usr/local/Zend/etc/php.ini", 4096) = 27
lstat64("/usr/local/Zend/etc/php.ini", {st_mode=S_IFREG|0664, st_size=40971, ...}) = 0

So this version of PHP reads php.ini from /usr/local/lib/php.ini (but it tries /usr/local/bin first).

The more sophisticated approach if I only care about a specific syscall:

$ strace -e open php 2>&1 | grep php.ini
open("/usr/local/bin/php.ini", O_RDONLY) = -1 ENOENT (No such file or directory)
open("/usr/local/lib/php.ini", O_RDONLY) = 4

The same approach work for a lot of other things. Have multiple versions of a library installed at different paths and wonder exactly which actually gets loaded? etc.

2) Why does this program not open my file?

Ever run into a program that silently refuse to read a file it doesn't have read access to, but you only figured out after swearing for ages because you thought it didn't actually find the file? Well, you already know what to do:

$ strace -e open,access 2>&1 | grep your-filename

Look for an open() or access() syscall that fails

3) What is that process doing RIGHT NOW?

Ever had a process suddenly hog lots of CPU? Or had a process seem to be hanging?

Then you find the pid, and do this:

root@dev:~# strace -p 15427
Process 15427 attached - interrupt to quit
futex(0x402f4900, FUTEX_WAIT, 2, NULL 
Process 15427 detached

Ah. So in this case it's hanging in a call to futex(). Incidentally in this case it doesn't tell us all that much - hanging on a futex can be caused by a lot of things (a futex is a locking mechanism in the Linux kernel). The above is from a normally working but idle Apache child process that's just waiting to be handed a request.

But "strace -p" is highly useful because it removes a lot of guesswork, and often removes the need for restarting an app with more extensive logging (or even recompile it).

4) What is taking time?

You can always recompile an app with profiling turned on, and for accurate information, especially about what parts of your own code that is taking time that is what you should do. But often it is tremendously useful to be able to just quickly attach strace to a process to see what it's currently spending time on, especially to diagnose problems. Is that 90% CPU use because it's actually doing real work, or is something spinning out of control.

Here's what you do:

root@dev:~# strace -c -p 11084
Process 11084 attached - interrupt to quit
Process 11084 detached
% time     seconds  usecs/call     calls    errors syscall
------ ----------- ----------- --------- --------- ----------------
 94.59    0.001014          48        21           select
  2.89    0.000031           1        21           getppid
  2.52    0.000027           1        21           time
------ ----------- ----------- --------- --------- ----------------
100.00    0.001072                    63           total
root@dev:~# 

After you've started strace with -c -p you just wait for as long as you care to, and then exit with ctrl-c. Strace will spit out profiling data as above.

In this case, it's an idle Postgres "postmaster" process that's spending most of it's time quietly waiting in select(). In this case it's calling getppid() and time() in between each select() call, which is a fairly standard event loop.

You can also run this "start to finish", here with "ls":

root@dev:~# strace -c >/dev/null ls
% time     seconds  usecs/call     calls    errors syscall
------ ----------- ----------- --------- --------- ----------------
 23.62    0.000205         103         2           getdents64
 18.78    0.000163          15        11         1 open
 15.09    0.000131          19         7           read
 12.79    0.000111           7        16           old_mmap
  7.03    0.000061           6        11           close
  4.84    0.000042          11         4           munmap
  4.84    0.000042          11         4           mmap2
  4.03    0.000035           6         6         6 access
  3.80    0.000033           3        11           fstat64
  1.38    0.000012           3         4           brk
  0.92    0.000008           3         3         3 ioctl
  0.69    0.000006           6         1           uname
  0.58    0.000005           5         1           set_thread_area
  0.35    0.000003           3         1           write
  0.35    0.000003           3         1           rt_sigaction
  0.35    0.000003           3         1           fcntl64
  0.23    0.000002           2         1           getrlimit
  0.23    0.000002           2         1           set_tid_address
  0.12    0.000001           1         1           rt_sigprocmask
------ ----------- ----------- --------- --------- ----------------
100.00    0.000868                    87        10 total

Pretty much what you'd expect, it spents most of it's time in two calls to read the directory entries (only two since it was run on a small directory).

5) Why the **** can't I connect to that server?

Debugging why some process isn't connecting to a remote server can be exceedingly frustrating. DNS can fail, connect can hang, the server might send something unexpected back etc. You can use tcpdump to analyze a lot of that, and that too is a very nice tool, but a lot of the time strace will give you less chatter, simply because it will only ever return data related to the syscalls generated by "your" process. If you're trying to figure out what one of hundreds of running processes connecting to the same database server does for example (where picking out the right connection with tcpdump is a nightmare), strace makes life a lot easier.

This is an example of a trace of "nc" connecting to www.news.com on port 80 without any problems:

$ strace -e poll,select,connect,recvfrom,sendto nc www.news.com 80
sendto(3, "\\24\\0\\0\\0\\26\\0\\1\\3\\255\\373NH\\0\\0\\0\\0\\0\\0\\0\\0", 20, 0, {sa_family=AF_NETLINK, pid=0, groups=00000000}, 12) = 20
connect(3, {sa_family=AF_FILE, path="/var/run/nscd/socket"}, 110) = -1 ENOENT (No such file or directory)
connect(3, {sa_family=AF_FILE, path="/var/run/nscd/socket"}, 110) = -1 ENOENT (No such file or directory)
connect(3, {sa_family=AF_INET, sin_port=htons(53), sin_addr=inet_addr("62.30.112.39")}, 28) = 0
poll([{fd=3, events=POLLOUT, revents=POLLOUT}], 1, 0) = 1
sendto(3, "\\213\\321\\1\\0\\0\\1\\0\\0\\0\\0\\0\\0\\3www\\4news\\3com\\0\\0\\34\\0\\1", 30, MSG_NOSIGNAL, NULL, 0) = 30
poll([{fd=3, events=POLLIN, revents=POLLIN}], 1, 5000) = 1
recvfrom(3, "\\213\\321\\201\\200\\0\\1\\0\\1\\0\\1\\0\\0\\3www\\4news\\3com\\0\\0\\34\\0\\1\\300\\f"..., 1024, 0, {sa_family=AF_INET, sin_port=htons(53), sin_addr=inet_addr("62.30.112.39")}, [16]) = 153
connect(3, {sa_family=AF_INET, sin_port=htons(53), sin_addr=inet_addr("62.30.112.39")}, 28) = 0
poll([{fd=3, events=POLLOUT, revents=POLLOUT}], 1, 0) = 1
sendto(3, "k\\374\\1\\0\\0\\1\\0\\0\\0\\0\\0\\0\\3www\\4news\\3com\\0\\0\\1\\0\\1", 30, MSG_NOSIGNAL, NULL, 0) = 30
poll([{fd=3, events=POLLIN, revents=POLLIN}], 1, 5000) = 1
recvfrom(3, "k\\374\\201\\200\\0\\1\\0\\2\\0\\0\\0\\0\\3www\\4news\\3com\\0\\0\\1\\0\\1\\300\\f"..., 1024, 0, {sa_family=AF_INET, sin_port=htons(53), sin_addr=inet_addr("62.30.112.39")}, [16]) = 106
connect(3, {sa_family=AF_INET, sin_port=htons(53), sin_addr=inet_addr("62.30.112.39")}, 28) = 0
poll([{fd=3, events=POLLOUT, revents=POLLOUT}], 1, 0) = 1
sendto(3, "\\\\\\2\\1\\0\\0\\1\\0\\0\\0\\0\\0\\0\\3www\\4news\\3com\\0\\0\\1\\0\\1", 30, MSG_NOSIGNAL, NULL, 0) = 30
poll([{fd=3, events=POLLIN, revents=POLLIN}], 1, 5000) = 1
recvfrom(3, "\\\\\\2\\201\\200\\0\\1\\0\\2\\0\\0\\0\\0\\3www\\4news\\3com\\0\\0\\1\\0\\1\\300\\f"..., 1024, 0, {sa_family=AF_INET, sin_port=htons(53), sin_addr=inet_addr("62.30.112.39")}, [16]) = 106
connect(3, {sa_family=AF_INET, sin_port=htons(80), sin_addr=inet_addr("216.239.122.102")}, 16) = -1 EINPROGRESS (Operation now in progress)
select(4, NULL, [3], NULL, NULL)        = 1 (out [3])

So what happens here?

Notice the connection attempts to /var/run/nscd/socket? They mean nc first tries to connect to NSCD - the Name Service Cache Daemon - which is usually used in setups that rely on NIS, YP, LDAP or similar directory protocols for name lookups. In this case the connects fails.

It then moves on to DNS (DNS is port 53, hence the "sin_port=htons(53)" in the following connect. You can see it then does a "sendto()" call, sending a DNS packet that contains www.news.com. It then reads back a packet. For whatever reason it tries three times, the last with a slightly different request. My best guess why in this case is that www.news.com is a CNAME (an "alias"), and the multiple requests may just be an artifact of how nc deals with that.

Then in the end, it finally issues a connect() to the IP it found. Notice it returns EINPROGRESS. That means the connect was non-blocking - nc wants to go on processing. It then calls select(), which succeeds when the connection was successful.

Try adding "read" and "write" to the list of syscalls given to strace and enter a string when connected, and you'll get something like this:

read(0, "test\\n", 1024)                 = 5
write(3, "test\\n", 5)                   = 5
poll([{fd=3, events=POLLIN, revents=POLLIN}, {fd=0, events=POLLIN}], 2, -1) = 1
read(3, "

This shows it reading "test" + linefeed from standard in, and writing it back out to the network connection, then calling poll() to wait for a reply, reading the reply from the network connection and writing it to standard out. Everything seems to be working right.

Other ideas?

I'd love to hear from you if you use strace in particularly creative ways. E-mail me (vidar@hokstad.com) or post comments.



2008-05-24 15:33 UTC OpenVZ and Apache troubleshooting: PRNG still contains insufficient entropy!

I was setting up Apache on OpenVZ earlier today, and ran into a problem with enabling SSL. Apache would refuse to start, and I'd see this in the error log:

[Sat May 24 07:48:10 2008] [warn] Init: PRNG still contains insufficient entropy!
[Sat May 24 07:48:10 2008] [error] Init: Failed to generate temporary 512 bit RSA private keyConfiguration Failed

The solution is quite simple, though not very intuitive. On the host do this (replace "100" with the name or id of your OpenVZ container):

vzctl set 100 --devices c:1:8:rw --save
vzctl exec 100 mknod /dev/random c 1 8
vzctl set 100 --devices c:1:9:rw --save
vzctl exec 100 mknod /dev/urandom c 1 9

Apache's SSL support requires /dev/random and /dev/urandom to seed the PRNG. Note that if only /dev/urandom is missing, Apache may seem to start, but eat all CPU. If you attach "strace" to it, you may see it spin over attempting to open /dev/urandom over and over.



2008-04-16 23:29 UTC OpenVz, /proc/user_beancounters and tcpsndbuf

If you're using OpenVz, you owe it to yourself to take a look at /proc/user_beancounters every now and again. Just today at work we were having bizarre problems with one of the containers:

Everything would seemingly work fine. Then the load would spike from 0.something to 150+ in less than a minute. Even weirder, when I tried strace'ing some of the processes that seemed to hog the CPU, things looked normal. Imagine my surprise when ran top again, and the offending processes suddenly didn't use much CPU anymore - each time I strace'd a process, it's CPU usage would drop.

user_beancounters to the rescue:

# more /proc/user_beancounters

Version: 2.5 uid resource held maxheld barrier limit failcnt [snipped other values] tcpsndbuf 663088 3190632 4000000 4000000 90686

Uh-oh. The failcnt (in red) was huge (This output is actually from AFTER the problem was fixed - that's why failcnt is large even though "maxheld" which shows the maximum value reached is lower than barrier and limit). failcnt shows when the limits have been reached, and so in a properly running and setup system it should remain fairly stable, though not necessarily at 0 (the odd massive spike in "something" could cause an error here or there - things can't always be perfect). In this case the failcnt shot up each time the problem occurred - we observed the "held" value hitting the limit once to make sure it was the cause before increasing it:

vzctl set 204 --save --tcpsndbuf 4000000:4000000

The line above was our final change - we increased it gradually, but each time it kept going up until it got dangerously close to the new limit. "maxheld" shows how high it eventually got.

This problem is a nasty one - the processes did not handle hitting the tcpsndbuf limit very well, and so if one process hit it, the container started spinning out of control. Everything slowly ground to a halt as Apache handled connections slower, causing more simultaneous servers to be returning data, requiring more buffers, causing more of them to lock up as they were unable to complete, causing memory usage to spin out of control too, to the point where I couldn't even get into the container.

Luckily for us recovery is one of the areas where OpenVz really shines, though. Because the processes of the containers are visible in the host as normal processes, I could kill enough of the runaway processes from the host to get back in, restart Apache and clear things up, and then proceed to analyze and fix the problem without even having to consider restarting the whole container. Setting limits judiciously to make sure the host will always have enough resources is of course key to this.

Another benefit of this is that you can do certain health monitoring from the "outside" that would be impossible to reliably do with a monitoring process running inside the container itself - from the host I could still look at what limits where being hit etc. at the same time as the container was so loaded and messed up that Nagios etc. on the container itself couldn't run (nor send data out over TCP - it would hang because of the problem we were facing in the first place)

In this specific case the container was a "legacy" container that holds a lot of different stuff for different clients that used to run directly on a single host. Virtualizing it let us migrate the sites to a new host with no downtime as well as keep in-sync copies on other hosts for near immediate takeover on failure while we work to migrate those clients to an even more failure tolerant cluster.

Through some brutal routing tricks (excessive abuse of arp pings and temporary address rewrites with iptables on our firewall to ensure clients got to the new host immediately) we actually migrated these services off the physical host and into a container with no site downtime.

The fact there's so much stuff on it made not having to do a reboot quite essential. Even then, "rebooting" OpenVz containers is blindingly fast, since the container doesn't need to go through the typical boot motions of checking hardware, checking filesystems etc. that a physical box or even Xen usually would.

But that's a digression. The morale of this story is that if you see "weird stuff" happening to your OpenVz containers, /proc/user_beancounters should be one, if not THE, first place(s) you look.



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E-mail: vidar@hokstad.com Skype: vhokstad
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I was born April 21st, 1975, in Oslo, Norway. Since 2000 I've been living in London, UK. I'm married and we just had our first child, Tristan Ikemefuna Hokstad.

I'm working for Aardvark Media as Director of Technology. I'm also currently on the board of SpatialQ, a startup in the GIS space, and an advisor to Skoach, a startup doing a time management app for people with ADD.

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